RDKit
Open-source cheminformatics and machine learning.
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#include <DistViolationContrib.h>
Public Member Functions | |
DistViolationContrib () | |
DistViolationContrib (ForceFields::ForceField *owner, unsigned int idx1, unsigned int idx2, double ub, double lb, double weight=1.0) | |
Constructor. | |
double | getEnergy (double *pos) const override |
returns our contribution to the energy of a position | |
void | getGrad (double *pos, double *grad) const override |
calculates our contribution to the gradients of a position | |
DistViolationContrib * | copy () const override |
return a copy | |
Public Member Functions inherited from ForceFields::ForceFieldContrib | |
ForceFieldContrib () | |
ForceFieldContrib (ForceFields::ForceField *owner) | |
virtual | ~ForceFieldContrib () |
Additional Inherited Members | |
Protected Attributes inherited from ForceFields::ForceFieldContrib | |
ForceField * | dp_forceField {nullptr} |
our owning ForceField | |
DEPRECATED: use DistViolationContribs instead A term to capture the violation of the upper and lower bounds by distance between two points
Definition at line 20 of file DistViolationContrib.h.
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inline |
Definition at line 23 of file DistViolationContrib.h.
DistGeom::DistViolationContrib::DistViolationContrib | ( | ForceFields::ForceField * | owner, |
unsigned int | idx1, | ||
unsigned int | idx2, | ||
double | ub, | ||
double | lb, | ||
double | weight = 1.0 |
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) |
Constructor.
owner | pointer to the owning ForceField |
idx1 | index of end1 in the ForceField's positions |
idx2 | index of end2 in the ForceField's positions |
ub | Upper bound on the distance |
lb | Lower bound on the distance |
weight | optional weight for this contribution |
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inlineoverridevirtual |
return a copy
Implements ForceFields::ForceFieldContrib.
Definition at line 41 of file DistViolationContrib.h.
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overridevirtual |
returns our contribution to the energy of a position
Implements ForceFields::ForceFieldContrib.
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overridevirtual |
calculates our contribution to the gradients of a position
Implements ForceFields::ForceFieldContrib.